PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491091.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 422aa    MW: 46258 Da    PI: 8.0332
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491091.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53.1e-104873126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtG C yG++C+++H+
  XP_004491091.1 48 PGEPDCLYYLRTGMCGYGSNCRYNHP 73
                    5789*********************8 PP

2zf-CCCH37.53.8e-1292116327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tGtCkyG++Ck++H++
  XP_004491091.1  92 QPDCEYFLKTGTCKYGSTCKYHHPK 116
                     789********************96 PP

3zf-CCCH38.12.6e-12139161527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtG Ck+G  CkF+H++
  XP_004491091.1 139 SCPYYMRTGSCKFGVACKFHHPQ 161
                     6********************97 PP

4zf-CCCH39.96.8e-13274299227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C++f+ tGtCkyG+ CkF+H++
  XP_004491091.1 274 DQPECKYFMSTGTCKYGSDCKFHHPK 299
                     689*********************96 PP

5zf-CCCH32.12e-10319342326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++C++++ +G Ck+G++CkF H+
  XP_004491091.1 319 NAICSYYRLYGVCKFGPTCKFDHP 342
                     689********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9394775IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-54774IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-74973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-65274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-45373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.75689117IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-589116IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-1092116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-595116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-6133163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723134162IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4136161IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5139161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.586272300IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6272299IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-11274299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-7276301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-6278299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122316344IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5316343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5317343IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-8320342IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4321341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MPENRQVLKN AASNPSGDNI EDAIRRLKIN DNRDRDVTAQ SLPFPDRPGE PDCLYYLRTG  60
MCGYGSNCRY NHPANVSLVT QYGEELPERH GQPDCEYFLK TGTCKYGSTC KYHHPKDRRG  120
AAPVIFNTLG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QQQASFGAYP VAGSPPSTTI  180
TSSGFPYAGG FPAWSVPRMS SYLSGQGIQS YVPPFLPSSQ GIMPALSWSN YMGSMSPAIP  240
TSFLGSNLVY DYMNPGETLS GGQVMSSTLP DRPDQPECKY FMSTGTCKYG SDCKFHHPKE  300
RIGQSLLVNP LGLPMRPGNA ICSYYRLYGV CKFGPTCKFD HPVLAIPQNY GLPSPAISVF  360
DASLLNSPRR VSTVQPTETP PSKLSSDKLQ QSDTKAATED SSKQGDDTAS NSRTPSSESL  420
QE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491091.10.0PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLG7KH860.0G7KH86_MEDTR; Uncharacterized protein
STRINGGLYMA14G05460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-112C3H family protein